The Single-Cell Muscle Project (scMuscle) aims to collect, analyze, and provide to the research community skeletal muscle transcriptomic data.

Click one of the tabs above to begin viewing the data...

Current data version: 1.1 (details found here )

This resource was developed by the Cosgrove and De Vlaminck Labs at Cornell University.

Code for this web app is available here . To report errors or request new features, please post an issue on the Github page or email

Please cite this paper when using this resource:

McKellar, D.W., Walter, L.D., Song, L.T. et al. Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration. Commun Biol 4, 1280 (2021).

Click here to load entire dataset. (opens with 10% of all cells) Re-draw plots to see additional data once loaded.